NO GUI CHIMERA INSTALL

NO GUI CHIMERA INSTALL

You will need to install a managed queuing system to handle job submission.Ĭurrently we support (to varying degrees) Sun Grid Engine, PBS, LSF, andĬondor. How can I run Phenix across multiple computers in our lab? Because of threadingĬonflicts, OpenMP is not compatible with the Phenix GUI. The argument '-openmp' to the install command. This requires using the source installer for Phenix, and adding OpenMP library, which automatically parallelizes specific instructions suchĪs the FFT. Options, it is also possible to compile phenix.refine and Phaser with the Queuing systems this may require manual input of the queue submission command.

(phenix.refine is the major exception) also support parallelization over tobuild data.mtz model.pdb seq.dat nproc=5Įquivalent controls are usually displayed in the GUI. In most cases this is done by adding the 'nproc' keyword, for instance: Phenix.find_tls_groups support runtime configuration of parallel processing. How can I use multiple processors to run a job? Run Phenix on (relatively high-end) systems from 2008, but having lots of In many cases older hardware is fine and we ourselves continue to Should be sufficient, and at least 2GB of RAM per processor core is To summarize: mostĬonsumer-grade systems (including laptops) purchased in the last three years What kind of hardware do I need to run Phenix?Ī set of loose guidelines is here. Individual programs may have additional citations. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.ĭ.

No gui chimera